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Los olvidados: Non-BRCA variants associated with Hereditary breast cancer in Mexican population
Breast Cancer Research volume 27, Article number: 7 (2025)
Abstract
Background
Hereditary predisposition to breast and ovarian cancer syndrome (HBOC) is a pathological condition with increased cancer risk, including breast (BC), ovarian cancer (OC), and others. HBOC pathogenesis is caused mainly by germline pathogenic variants (GPV) in BRCA1 and BRCA2 genes. However, other relevant genes are related to this syndrome diagnosis, prognosis, and treatment, including TP53, PALB2, CHEK2, ATM, etc. This study aimed to identify the prevalence of non-BRCA genes in HBOC patients of Northeast Mexico.
Methods
This multicentric study included 1285 patients with HBOC diagnosis from four oncologic centers in northeast Mexico from 2016 to 2023. Genomic and clinical data were analyzed based on multi-gene panel results and electronic records of the medical geneticist consultation. For the data analysis of qualitative and quantitative variants, JASP statistical software (version 0.18.1) was used, taking p < 0.05 as a significant result.
Results
We found that 32.7% of the patients had at least one GPV in non-BRCA genes. The five most frequent non-BRCA genes were CHEK2, PALB2, MUTYH, CDKN2A, and ATM. Among the group of non-BRCA genes, six are involved in the homologous repair pathway (HR), and three are related to DNA damage repair (DDR) pathways. In analyzing GPVs in molecular pathways, both have similar frequencies with no statistical difference for BC.
Conclusion
Multi-gene testing implementation improves the detection of often overlooked genes related to HBOC pathogenesis and treatment. Non-BRCA GPVs in Northern Mexico correspond to one-third of the HBOC cases, including HR and DDR pathways genes that would be misdiagnosed if not tested. HR patient carriers are potential targets of iPARP therapies. The optimal approach to cancer treatment for non-BRCA mutation carriers warrants further investigation to develop newer therapies.
Introduction
Breast cancer (BC) and ovarian cancer (OC) have multifactorial etiology. Up to 10–15% of BC & OC are estimated to be hereditary[1, 2]. Hereditary predisposition to breast and ovarian cancer syndrome (HBOC) is a pathological condition caused mainly by germline pathogenic variants (GPV) in BRCA1 and BRCA2 genes, explaining 25–28% of BC and 40% of OC patients with a positive familial history [3]. BRCA carriers have a lifetime risk of 45–72% and 11–44% of developing BC and OC by age 70, respectively [2, 4, 5].
Thanks to newer technologies such as next-generation sequencing (NGS), several non-BRCA BC susceptibility genes have been identified, such as ATM, CHEK2, PALB2, TP53, etc. [6,7,8,9,10,11,12,13,14,15]. Identifying non-BRCA genes involved in the pathogenesis of HBOC improves diagnosis and gives the oncologist therapeutic options.
It is well-known that the germline genetic cancer susceptibility is heterogeneous [16]. The prevalence and spectrum of GPVs in HBOC cancer patients may vary across ethnicities [6, 17,18,19,20]. According to the National Comprehensive Cancer Network (NCCN) guidelines, the genetic test now incorporates 17 non-BRCA genes (ATM, BARD1, BRIP1, CDH1, CHEK2, EPCAM, MSH2, MLH1, MSH6, NF1, PMS2, PALB2, PTEN, RAD51C, RAD51D, STK11, and TP53) for a comprehensive analysis of the patients [21,22,23]. Globally, there is a tendency to include these genes in large cohorts to elucidate the pathogenicity of HBOC and address better recommendations for patients and their families [24, 25].
These genes have been selected as they are part of the DNA damage response (DDR) and repair mechanism; these are part of a pathway network protecting DNA integrity [26]. The main components in DDR are divided into the sensors of damage, the transducers of signals downstream, and the effectors that evaluate the cell’s fate by repairing the damage or executing apoptosis and immune destruction [27]. After the damage detection, one of six different repair pathways is mainly activated depending on the type of DNA damage: Homologous recombination (HR), non-homologous end joining (NHEJ), alternative end-joining (A-EJ) for double-strand breaks (DSBs), nucleotide excision repair (NER), for bulky DNA lesions; mismatch repair (MMR), for single-strand breaks (SSBs) and, base excision repair (BER) for oxidation, alkylation, deamination, and methylation damage [28]. DDR pathways do not play independently in the DNA repair machinery [26]. Genes encoding DNA response and repair pathways are generally mutated in cancer, causing genomic instability. This feature has been acknowledged by the scientific community, leading to the creation of targeted therapies for cancer treatment. One of the most prominent is the poly(ADP-ribose) polymerase PARP inhibitor that takes advantage of a deficit in the HR pathway to create a synthetic lethality that promotes cell death [26]. Treatments related to this feature are vital in hereditary cancer syndromes, where most genes are related to DNA repair mechanisms and can be used for a better outcome.
Mexico has limited information on the prevalence of non-BRCA genes related to HBOC [29, 30]. This study aimed to identify the prevalence of non-BRCA germline variants associated with HBOC in Northeast Mexico.
Material and methods
Patients and approval from the ethics committee
This multicenter study recruited 1285 patients from the Northern Mexican region from March 2016 to March 2023. All participant institutions have their oncologic service, including four public health institutions: The IMSS (Instituto Mexicano del Seguro Social), ISSSTE (Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado), Hospital Regional Materno Infantil, and Hospital Universitario (HU)” Dr. Jose Eleuterio González”; and two private institutions: Oncare Clinical Center, and Breast Cancer Center-Tec Salud.
Patients with a cancer diagnosis were evaluated in one of the participant centers and referred by a medical oncologist for a genetic evaluation due to the age of diagnosis and or family history of cancer. Self-referred patients came to consultation in the HU prevention clinic based on cancer personal or family history.
After the medical geneticist evaluation, genetic testing was offered to patients who met NCCN criteria for any hereditary cancer syndrome[23, 31]. The NCCN Guidelines® is the recognized standard for clinical direction and policy in cancer care. It is the most thorough and frequently updated clinical practice guidelines available in any area of medicine[23].
Patients with a clinical diagnosis of HBOC were invited to participate in the study and signed an informed consent letter [23]. Patients who did not fulfill the NCCN criteria for HBOC or could not undergo genetic testing were excluded. However, all patients with clinical suspicions of hereditary cancer were enrolled in a screening program according to the suspected diagnosis.
The protocol was approved by the Institutional Ethics Committee of the University Hospital “Dr. José Eleuterio González” (registration number ON18-00015).
Clinical data
Data from patients was collected in oncology and genetic consultation, and from electronic clinical records, including sex, age of diagnosis, cancer type, familial history, clinical stage, germline variants, etc.
NGS multi-gene cancer panels and Sanger analysis
Genomic DNA was isolated from saliva or peripheral blood samples. External services multi-gene sequencing panels (from 7, 30, 35, and 84 genes) were performed. The 7 and 84 gene panels were made by Invitae Multi-Cancer Panel (©Invitae Corporation, San Francisco, CA, USA). The 30-gene panel was from Onco Life Test® (Life in Genomics®, Ciudad de México, México). We also included myRisk® Hereditary Cancer 35-gene panel (Myriad Genetics®, Salt Lake, UT, USA). Also, three patients had exome, and one had only Sanger sequencing. All variants were confirmed with Sanger sequencing. Panel selection was made based on the patient’s or institution’s availability and resources.
Genetic counseling
Patients received face-to-face pre-test and post-test genetic counseling and laboratory reports from the leading geneticists (trained in oncogenetics) from each of the established hereditary cancer programs of Nuevo León México. Positive patients for genetic tests entered into an early detection and prevention program [20].
Variant analysis and classification
According to the American College of Medical Genetics (ACMG) guideline [32], variants were classified as pathogenic, likely pathogenic, uncertain significance, likely benign, and benign. All variants were reviewed in ClinVar [33] and VarSome databases [34].
We compared the frequency of non-BRCA and BRCA against molecular pathway, cancer type, age of cancer diagnosis (< 40 years, 41–50, 51–60, and > 60 years), number of neoplasias, and the time lapse between tumors. We also studied the clinical stage and histologic type in BC (triple negative breast cancer (TNBC) and non-triple negative breast cancer (NTNBC)) and pregnancy associated breast cancer (PABC). All analyses were made for all non-BRCA genes and individually for our cohort’s three most frequent genes (CHEK2, PALB2, MUTYH).
Statistical analysis
Data analysis was reported as median and interquartile ranges, and the Mann–Whitney U test was used to compare all non-parametric quantitative variables between our groups (BRCA vs non-BRCA, PABC by the age of diagnosis, molecular pathways, and as between the groups and BC phenotype). Frequency, percentages, Fisher’s exact test, and X2 for qualitative variables were performed, including the frequency of BRCA and non-BRCA GPVs, neoplasias in patients and relatives, clinical stage, and association with multiple neoplasias. The JASP statistical software (version 0.18.1) was used for all statistical analyses, and statistical significance was set at p < 0.05.
Results
Clinicopathological data
The hereditary cancer programs evaluated 1285 patients, 1000 cancer patients, and 285 non-cancer patients. Among cancer patients, 327 (32.7%) were positive for GPVs related to HBOC: 317 (96.94%) carried one GPV, and 10 (3.05%) had two GPVs. The median age of diagnosis was 39 years (22–75); 318 (97.24%) were women, 11 (3.45%) with PABC, and 9 (2.75%) were men (Table 1).
A positive family history of cancer was detected in 253 (77%) patients. Among the patients with a positive familial cancer history, second-degree relatives were the most affected, followed by first degree. Regarding cancer type in relatives, BC was by far the most frequent (53.7%), followed by OC (6.5%), gastric (5.3%), and prostate (5.1%) (Table 2).
Most patients, 247 (75.53%), were referred from oncologic centers, and 70 (21.40%) were self-referred. The vast majority, 306 (93.57%) of our patients had BC diagnosis, and seven (2.14%) patients had non-HBOC-related neoplasias (cervical, lung, endometrial, colon, hemangioendothelioma, renal, and lymphoma) (Table 1).
We determined the risk factor of carrying a BRCA or non-BRCA GPV depending on the age of diagnosis. We found that by each year, there is a 1.029 times increase in the probability in favor of carrying a non-BRCA variant (OR = 1.029, 95% CI 1.003–1.055) and by each ten-year interval of 1.33. (OR = 1.33, 95% CI 1.035–1.724).
Most analyzed individuals had BC, unilateral in 268 (81.95%) and bilateral in 38 (11.62%). For the 145 TNBC analyzed cases, we observed a significantly higher frequency of BRCA GPVs than non-carrier patients (P-value < 0.001). Also, we did not find a difference in the age of diagnosis in TNBC patients versus other BC phenotypes.
In our cohort, BC was mainly found in the intermediate clinical stage, 200 (61.16%), followed by earlier stage 33 (10.09%), and 14 (4.28%) in an advanced stage, with 80 (24.46%) missing data. There was no statistical difference between the clinical stage and BRCA status.
There were 52 (15.90%) cases with more than one cancer (46 with two and 5 with three primary tumors). The median time lapse between the first and second cancer was 60 months and 48 months between the second and third diagnosis. We found no statistical difference between patients with one or multiple primary tumors and the presence of any GPVs (BRCA or non-BRCA).
In the PABC subgroup (n = 11), the mean age of diagnosis was earlier (33.09 years) than in the whole sample (40.13 years) (p = 0.007). Patients in this group were younger than 36 years (24–43 years), with only one patient who was 43 years old at diagnosis.
GPVs and molecular pathways analysis
Multi-gene panels were used to diagnose the 1285 patients, including panels from 7, 30, 35, and 84 genes (Additional file 1: Table S1). From 327 positive patients, 80 were analyzed by the 7-gene panel, 85 by the 30-gene panel, ten by the 35-gene panel, and 158 with the 84-gene panel. Also, three patients had exome, and one had only Sanger sequencing. All variants were confirmed with Sanger sequencing.
BRCA GPVs were the most frequent among our cohort, with BRCA1 accounting for 159 (47.18%) and BRCA2 for 65 (19.28%). There were 113 GPVs (33.53%) in 24 non-BRCA genes. The five most frequent non-BRCA genes were CHEK2 (24, 21.24%), PALB2 (21, 18.58%), MUTYH (11, 9.73%), CDKN2A (10, 8.85%), and ATM (9, 7.96%). Among the group of non-BRCA genes, six were involved in the HR pathway, and three were related to the DDR pathway (Fig. 1).
The highest mutation rate for specific GPVs was CHEK2 with c.707 T > C in 21/24 cases, followed by MUTYH c.1187G > A in 6/11 cases, and CDKN2A c.146 T > C in 6/10 cases and PALB2 c.2167_2168del in 5/21 cases, all of them found in non-related patients. In the subgroup of PABC, three of them (27.27%) had non-BRCA GPVs (CHEK2, PALB2 & MUTYH).
For molecular pathways, we compared the age of diagnosis vs three groups (DDR, HR-BRCA, and HR non-BRCA), and we found a significant difference of p = 0.044. For the HR pathway divided into HR-BRCA (n = 222) and HR non-BRCA genes (n = 38), we found that HR-BRCA patients debuted younger than HR non-BRCA p = 0.041.
Regarding non-BRCA molecular pathways and cancer type, we analyzed BC (n = 72), HR (n = 38 53%), and DDR (n = 34 47%), as it was the most frequent neoplasia and we found no statistical difference between groups (p = 0.724).
In the individual analysis for the most frequent non-BRCA genes (CHEK2, PALB2 & MUTYH), there was an association between NTNBC and CHEK2 carriers (p = 0.001).
Discussion
Due to the implementation of multi-gene panels, the association of GPVs and HBOC has grown beyond BRCA genes. Unfortunately, in the oncology practice, non-BRCA genes are often forgotten [18]. Our study used various panels depending on the cost of panels and the sponsor (patient pay, foundations, donations, and investigation protocols). Most of our patients had broad gene panels (75%). Among our sample, 23.7% were analyzed by a 7-gene panel, which covered at least all high penetrance genes included in NCCN guidelines [23]. However, negative patients to the 7-gene panel could have a positive result if moderate penetrance genes were included. Further analysis of this population must be done to search for the detection rate. Also, three patients were included in exome analysis using a research protocol, and one patient was analyzed with Sanger because family GPV had already been detected.
Family history is still one of the main signs of suspected hereditary cancer; in our cohort, ¾ of our population had a positive family history of cancer. Interestingly, most patients had second-degree relatives. This is relevant as general knowledge focuses on the nuclear family, even when guidelines include second and third relatives supporting HSC suspicion. Also, the types of cancer found in relatives are according to expected in HBOC, with BC and OC being high in frequency. We found eight first and second-degree relatives of PALB2 patients with prostate cancer, not generally associated with this neoplasia but has been reported with a more aggressive and lethal form of prostatic cancer [35]. For CDKN2A, a gene known for an increased risk of pancreatic cancer and melanoma [36], we found only a second-degree relative with pancreatic cancer. Lastly, for MUTYH relatives, we found only one second-degree relative with gastric cancer. As said before, MUTYH is known to increase the risk of gastrointestinal tumors [37]. There were 43 relatives with unknown cancers; when asked patients about this situation, they said that affected members tend to be silent on the topic as they prefer to hide the information due to shame or fear.
NCCN guidelines for Genetic/Familial High-Risk Assessment: Breast, Ovarian, and Pancreatic in the genetic testing section have changed since the start of the study in 2016; NCCN expanded the age of diagnosis for TNBC to include patients over 60 years in 2023 [22]. Our cohort range of testing went from 22 to 75 years (median 39 years). With the updated criteria in 2023, we found 181 patients with GPVs, of which 19 (10.49%) were ≥ 60 years old, a considerable number of cases that would be lost with previous recommendations.
Our detection rate for GPVs (BRCA and non-BRCA) was 32.7%, similar to other Latin and Mexican series with 10–30% detection rates [19, 29, 38]. As in our cohort, patients older than 60 only account for 5.8% of GPVs, a population recently included in guidelines that can increase detection rates.
In our cohort, 2.2% of the patients had non-HBOC-related neoplasias. These patients had synchronic or metachronic neoplasias in other organs not commonly associated with the HBOC spectrum, including cervical, lung, endometrial, colon, hemangioendothelioma, renal, and lymphoma. Other studies also report unusual phenotypes in patients with hereditary cancer syndromes like Lynch and Banayan Riley Ruvalcaba [39,40,41]. Among these patients, there were two cases with non-BRCA GPVs, one case with synchronic prostate and renal cancer with a MUTYH GPV, and a case of synchronic BC and lung cancer with an ATM GPV. It has been reported that monoallelic MUTYH GPVs are related to renal neoplasia [42]. ATM GPVs can also increase the risk of lung adenocarcinoma [43]. This association needs to be validated with larger patient cohorts. Our results support the idea that there is no complete understanding of the non-classic spectrum of neoplasias associated with HBOC, reflecting the complexity of the syndrome.
There were no differences in the clinical stage of BC in our cohort compared with other reports for the Mexican population, where almost half of the patients are diagnosed in locally advanced stages [44].
There was an association between TNBC and BRCA and NTNBC patients with CHEK2 GPVs. Other reports associate TP53 with HER2 + BC [45], CHEK2 with Luminal B [46], and BRCA with TNBC [47], both concordant with our results. CHEK2 is considered a highly penetrant gene with a moderate risk for BC (20–40%) in both monoallelic and biallelic states [48, 49]. There was insufficient statistical power to associate genotype–phenotype in the less frequent non-BRCA; further analysis with increased cases may address this topic.
We found 33.53% of non-BRCA GPVs, higher than other series, including Asian, Spain, and Latin American populations [50,51,52,53], with a range of detection between 4–12%. The genetic admixture of the northern Mexican population, the selection of patients, and the Latino population reporting higher CHEK2 c.707C > T GPV could explain why we had higher detection rates than other reports [54].
Regarding the frequency of the non-BRCA gene, we found that CHEK2 was the most frequent, followed by PALB2, MUTYH, CDKN2A, and ATM. Other studies in different populations report PALB2 as the most frequent non-BRCA gene, followed by CHEK2, ATM and/or TP53. In Latin populations, CHEK2 GPVs are reported as the most frequent non-BRCA GPVs, addressing the 707 T > C with a possible founder effect [54]. Unfortunately, none of these studies analyzed MUTYH or CDKN2A GPVs, even when international guidelines include them in HBOC patient testing.
Even though there is conflicting evidence of the potential pathogenicity of MUTYH in a monoallelic state, there has been an association with BC not only in the development of the disease but also in the characteristics of the tumor, showing more aggressive behavior and diversity [37]. Also, in various cohorts of BC patients, monoallelic MUTYH GPVs are always the most frequent findings [55,56,57], even suggesting more strict surveillance [57]. For CDKN2A GPVs, recent evidence has been associated with an increased risk of BC development (OR: 3.35, 95% CI: 1.43–7.75). In our cohort, MUTYH and CDKN2A had a higher frequency than ATM or TP53. Our findings explain the importance of population-specific analysis and multi-gene panels in understanding HBOC physiopathology.
From the patients with two or more neoplasias, we found that the time-lapse between cancer was no different for the GPVs in BRCA or non-BRCA carriers, no matter the penetrance of the genes. These results highlight the idea that HBOC is a complex diagnosis with similar behavior regardless of the etiology. Based on our results, we recommend that non-BRCA patients should have the same strict surveillance as BRCA patients.
In the subgroup of PABC, we found a difference in the age of diagnosis compared to the whole sample. This has been reported in other studies in pregnant women with BRCA GPVs, who have a younger presentation than non-carriers [58]. Also, some studies found a higher risk of cancer with each pregnancy [59]; meanwhile, other studies have observed that only BRCA2 increases the risk of cancer before 50 years [60]. Our study found six patients with BRCA2, two with BRCA1, and three with non-BRCA genes. However, there is no clear evidence of the role of non-BRCA genes in the development of PABC or other neoplasias. We need to increase our population to analyze the effect in this subgroup.
In the analysis of GPVs in molecular pathways, we found that age of appearance and tumor type were relevant, as patients younger than 40 years were associated with BRCA GPVs, and patients with OC had a higher chance of carrying an HR gene GPV. Also, patients with GPV in DDR genes had a higher risk of developing BC and having cancer between 41–50 years. This is important because some tumors in the HBOC spectrum have molecular features for BRCA and non-BRCA genes related to an HR pathway deficiency that can be exploited as therapeutic targets like PARP inhibitors. Although PARP inhibitors are mainly used in BRCA + tumors, recent studies also suggest high responses in non-BRCA mutated cells, including genes like ATM, ATR, RAD51, and BARD1 that are related to genomic instability generation and indicative of homologous recombination deficiency (HRD). The fact that in our study, 31.85% of the non-BRCA carriers had DDR GPVs like ATM opens the possibility of applying PARP inhibitors as monotherapy or, in combination with ATM inhibitors, can improve the prognosis of these patients. The phase I clinical trial (NCT02588105) assessed that the use of ATM inhibitors as monotherapy had low antitumor effects, while pre-clinical studies in cell lines showed that the combination of the novel ATM inhibitor AZD0156 in combination with iPARP leads to an increase in DNA double-strand break signaling, cell-cycle arrest, and apoptosis [27].
Exploring genes outside the most commonly known raises awareness of the frequency of these often overlooked potential targets to develop and implement new targeted therapies, such as monotherapy or drug combinations, to enhance actual treatments and find ways to bypass drug resistance and cancer progression.
Conclusions
Non-BRCA GPVs in Northern Mexico correspond to one-third of the BC and OC cases, including HR and DDR pathways genes. HR patient carriers are potential targets of iPARP therapies. An optimal approach to cancer treatment for non-BRCA mutation carriers warrants further investigation. This project reinforces that multi-gene panels should be implemented as a standard of care in HBOC to ensure a complete diagnosis in hereditary cancer patients and improve surveillance strategies in non-BRCA patients.
Data Availability Statement
No datasets were generated or analysed during the current study.
Abbreviations
- HBOC:
-
Hereditary breast ovary cancer
- BC:
-
Breast cancer
- OC:
-
Ovary cancer
- GPV:
-
Germline pathogenic variant
- BRCA1:
-
Breast Cancer 1
- BRCA2:
-
Breast Cancer 2
- HR:
-
Homologous repair pathway
- DDR:
-
DNA damage repair
- ATM:
-
ATM Serine/Threonine Kinase
- BARD1:
-
BRCA1 Associated RING Domain 1
- BRIP1:
-
BRCA1 Interacting Helicase 1
- CDH1:
-
Cadherin 1
- CHEK2:
-
Checkpoint Kinase 2
- EPCAM:
-
Epithelial Cell Adhesion Molecule
- MSH2:
-
MutS Homolog 2
- MLH1:
-
MutL Homolog 1
- MSH6:
-
MutS Homolog 6
- NF1:
-
Neurofibromin 1
- PMS2:
-
PMS1 Homolog 2, Mismatch Repair System Component
- PALB2:
-
Partner And Localizer Of BRCA2
- PTEN:
-
Phosphatase And Tensin Homolog
- RAD51C:
-
RAD51 Paralog C
- RAD51D:
-
RAD51 Paralog D
- STK11:
-
Serine/Threonine Kinase 11
- TP53:
-
Tumor Protein P53
- IMSS:
-
Instituto Mexicano del Seguro Social
- ISSSTE:
-
Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado
- HU:
-
Hospital Universitario
- NCCN:
-
National Comprehensive Cancer Network
- NGS:
-
Next generation sequencing
- TNBC:
-
Triple-negative breast cancer
- NTNBC:
-
Non-triple-negative breast cancer
- iPARP:
-
Poly ADP-ribose polymerase inhibitors
References
Nelson HD, Pappas M, Zakher B, Mitchell JP, Okinaka-Hu L, Fu R. Risk assessment, genetic counseling, and genetic testing for BRCA-related cancer in women: a systematic review to update the U.S. Preventive Services Task Force recommendation. Ann Intern Med. 2014;160(4):255–66.
Lasta JL, Groto AD, Brandalize APC. Assessment of medical knowledge toward genetic testing for individuals with hereditary breast and ovarian cancer syndrome in Brazil. Prev Med Rep. 2023;35:102356.
Antoniou A, Pharoah PD, Narod S, Risch HA, Eyfjord JE, Hopper JL, Loman N, Olsson H, Johannsson O, Borg A, et al. Average risks of breast and ovarian cancer associated with BRCA1 or BRCA2 mutations detected in case Series unselected for family history: a combined analysis of 22 studies. Am J Hum Genet. 2003;72(5):1117–30.
Mano R, Tamir S, Kedar I, Benjaminov O, Baniel J, Tabachnik T, Margel D. Malignant abnormalities in male BRCA mutation carriers: results from a prospectively screened cohort. JAMA Oncol. 2018;4(6):872–4.
Petrucelli N DM, Pal T. : BRCA1- and BRCA2- Associated Hereditary Breast and Ovarian Cancer. In: GeneReviews® edn. Edited by Adam MP FJ, Mirzaa GM, et al. Seattle (WA): University of Washington, Seattle; 2023.
Su Y, Yao Q, Xu Y, Yu C, Zhang J, Wang Q, Li J, Shi D, Yu B, Zeng Y, et al. Characteristics of germline non-BRCA mutation status of high-risk breast cancer patients in china and correlation with high-risk factors and multigene testing suggestions. Front Genet. 2021;12:674094.
Tavtigian SV, Oefner PJ, Babikyan D, Hartmann A, Healey S, Le Calvez-Kelm F, Lesueur F, Byrnes GB, Chuang SC, Forey N, et al. Rare, evolutionarily unlikely missense substitutions in ATM confer increased risk of breast cancer. Am J Hum Genet. 2009;85(4):427–46.
Cybulski C, Gorski B, Huzarski T, Masojc B, Mierzejewski M, Debniak T, Teodorczyk U, Byrski T, Gronwald J, Matyjasik J, et al. CHEK2 is a multiorgan cancer susceptibility gene. Am J Hum Genet. 2004;75(6):1131–5.
Meijers-Heijboer H, van den Ouweland A, Klijn J, Wasielewski M, de Snoo A, Oldenburg R, Hollestelle A, Houben M, Crepin E, van Veghel-Plandsoen M, et al. Low-penetrance susceptibility to breast cancer due to CHEK2(*)1100delC in noncarriers of BRCA1 or BRCA2 mutations. Nat Genet. 2002;31(1):55–9.
Antoniou AC, Casadei S, Heikkinen T, Barrowdale D, Pylkas K, Roberts J, Lee A, Subramanian D, De Leeneer K, Fostira F, et al. Breast-cancer risk in families with mutations in PALB2. N Engl J Med. 2014;371(6):497–506.
Casadei S, Norquist BM, Walsh T, Stray S, Mandell JB, Lee MK, Stamatoyannopoulos JA, King MC. Contribution of inherited mutations in the BRCA2-interacting protein PALB2 to familial breast cancer. Cancer Res. 2011;71(6):2222–9.
Olivier M, Hollstein M, Hainaut P. TP53 mutations in human cancers: origins, consequences, and clinical use. Cold Spring Harb Perspect Biol. 2010;2(1):a001008.
Zhang H, Ahearn TU, Lecarpentier J, Barnes D, Beesley J, Qi G, Jiang X, O’Mara TA, Zhao N, Bolla MK, et al. Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses. Nat Genet. 2020;52(6):572–81.
Wilcox N, Dumont M, Gonzalez-Neira A, Carvalho S, Joly Beauparlant C, Crotti M, Luccarini C, Soucy P, Dubois S, Nunez-Torres R, et al. Exome sequencing identifies breast cancer susceptibility genes and defines the contribution of coding variants to breast cancer risk. Nat Genet. 2023;55(9):1435–9.
Ahearn TU, Zhang H, Michailidou K, Milne RL, Bolla MK, Dennis J, Dunning AM, Lush M, Wang Q, Andrulis IL, et al. Common variants in breast cancer risk loci predispose to distinct tumor subtypes. Breast Cancer Res. 2022;24(1):2.
Feliubadalo L, Lopez-Fernandez A, Pineda M, Diez O, Del Valle J, Gutierrez-Enriquez S, Teule A, Gonzalez S, Stjepanovic N, Salinas M, et al. Opportunistic testing of BRCA1, BRCA2 and mismatch repair genes improves the yield of phenotype driven hereditary cancer gene panels. Int J Cancer. 2019;145(10):2682–91.
Colas C, Golmard L, de Pauw A, Caputo SM, Stoppa-Lyonnet D. “Decoding hereditary breast cancer” benefits and questions from multigene panel testing. Breast. 2019;45:29–35.
Urbina-Jara LK, Rojas-Martinez A, Martinez-Ledesma E, Aguilar D, Villarreal-Garza C, Ortiz-Lopez R: Landscape of germline mutations in DNA repair genes for breast cancer in latin america: opportunities for PARP-like inhibitors and immunotherapy. Genes (Basel) 2019, 10(10)
Chavarri-Guerra Y, Villarreal-Garza C, Ferrigno AS, Mohar A, Aguilar D, Alvarez-Gomez RM, Gallardo-Alvarado L, Del Toro-Valero A, Quintero-Beulo G, Gutierrez-Delgado F, et al. Germline pathogenic variants in Mexican patients with hereditary triple-negative breast cancer. Salud Publica Mex. 2022;64(1):41–8.
Perez-Ibave DC, Garza-Rodriguez ML, Noriega-Iriondo MF, Flores-Moreno SM, Gonzalez-Geroniz MI, Espinoza-Velazco A, Castruita-Avila AL, Alcorta-Nunez F, Zayas-Villanueva OA, Gonzalez-Guerrero JF et al: Identification of germline variants in patients with hereditary cancer syndromes in northeast Mexico. Genes (Basel) 2023, 14(2).
Singh J, Thota N, Singh S, Padhi S, Mohan P, Deshwal S, Sur S, Ghosh M, Agarwal A, Sarin R, et al. Screening of over 1000 Indian patients with breast and/or ovarian cancer with a multi-gene panel: prevalence of BRCA1/2 and non-BRCA mutations. Breast Cancer Res Treat. 2018;170(1):189–96.
National Comprehensive Cancer Network (NCCN). Clinical Practice Guidelines in Oncology (NCCN Guidelines®). Genetic/Familial, High-Risk Assessment: Breast, Ovarian, and Pancreatic [https://www.nccn.org/professionals/physician_gls/pdf/genetics_bop.pdf, ]
NCCN Guidelines: Genetic/Familial High-Risk Assessment: Breast, Ovarian, and Pancreatic [https://www.nccn.org/guidelines/guidelines-detail?category=2&id=1503]
Tran VT, Nguyen ST, Pham XD, Phan TH, Nguyen VC, Nguyen HT, Nguyen HP, Doan PTT, Le TA, Nguyen BT, et al. Pathogenic variant profile of hereditary cancer syndromes in a vietnamese cohort. Front Oncol. 2021;11:789659.
Stradella A, Del Valle J, Rofes P, Feliubadalo L, Grau Garces E, Velasco A, Gonzalez S, Vargas G, Izquierdo A, Campos O, et al. Does multilocus inherited neoplasia alleles syndrome have severe clinical expression? J Med Genet. 2019;56(8):521–5.
Groelly FJ, Fawkes M, Dagg RA, Blackford AN, Tarsounas M. Targeting DNA damage response pathways in cancer. Nat Rev Cancer. 2023;23(2):78–94.
Nastasi C, Mannarino L, D’Incalci M. DNA damage response and immune defense. Int J Mol Sci. 2020;21(20):96.
Ye Z, Shi Y, Lees-Miller SP, Tainer JA. Function and molecular mechanism of the DNA damage response in immunity and cancer immunotherapy. Front Immunol. 2021;12:797880.
Quezada Urban R, Diaz Velasquez CE, Gitler R, Rojo Castillo MP, Sirota Toporek M, Figueroa Morales A, Moreno Garcia O, Garcia Esquivel L, Torres Mejia G, Dean M et al: Comprehensive analysis of germline variants in mexican patients with hereditary breast and ovarian cancer susceptibility. Cancers (Basel) 2018, 10(10).
Chavarri-Guerra YVG, C.; Rodriguez-Olivares, J.L.; Aguilar-y Mendez, D.; Quintero-Beulo, G.; Gutierrez-Delgado, F., Herzog, J.; Gruber, S.: Abstract P6–02–05. Prevalence of non-BRCA germline pathogenic variants in Mexican women with breast cancer referred for genetic cancer risk assessment. In: POSTER SESSION ABSTRACTS| MARCH 01 2023. vol. Cancer Res (2023) 83 (5_Supplement): P6–02–05.: American Association for Cancer Research; 2023.
National Comprehensive Cancer Network (NCCN). Clinical Practice Guidelines in Oncology (NCCN Guidelines®). Genetic/Familial High-Risk Assessment: Colorectal. [https://www.nccn.org/professionals/physician_gls/pdf/genetics_colon.pdf ]
Li MM, Datto M, Duncavage EJ, Kulkarni S, Lindeman NI, Roy S, Tsimberidou AM, Vnencak-Jones CL, Wolff DJ, Younes A, et al. Standards and guidelines for the interpretation and reporting of sequence variants in cancer: a joint consensus recommendation of the association for molecular pathology, american society of clinical oncology, and college of american pathologists. J Mol Diagn. 2017;19(1):4–23.
Landrum MJ, Lee JM, Benson M, Brown GR, Chao C, Chitipiralla S, Gu B, Hart J, Hoffman D, Jang W, et al. ClinVar: improving access to variant interpretations and supporting evidence. Nucleic Acids Res. 2018;46(D1):D1062–7.
Kopanos C, Tsiolkas V, Kouris A, Chapple CE, Albarca Aguilera M, Meyer R, Massouras A. VarSome: the human genomic variant search engine. Bioinformatics. 2019;35(11):1978–80.
Wokolorczyk D, Kluzniak W, Stempa K, Rusak B, Huzarski T, Gronwald J, Gliniewicz K, Kashyap A, Morawska S, Debniak T, et al. PALB2 mutations and prostate cancer risk and survival. Br J Cancer. 2021;125(4):569–75.
Danishevich A, Bilyalov A, Nikolaev S, Khalikov N, Isaeva D, Levina Y, Makarova M, Nemtsova M, Chernevskiy D, Sagaydak O et al: CDKN2A gene mutations: implications for hereditary cancer syndromes. Biomedicines 2023, 11(12).
Keske A, Weisman P, Ospina-Romero M, Raut P, Smith-Simmer K, Zakas AL, Flynn C, Xu J. Breast cancers in monoallelic MUTYH germline mutation carriers have clinicopathological features overlapping with those in BRCA1 germline mutation carriers. Breast Cancer Res Treat. 2024;204(1):151–8.
Keeney MG, Couch FJ, Visscher DW, Lindor NM. Non-BRCA familial breast cancer: review of reported pathology and molecular findings. Pathology. 2017;49(4):363–70.
Engel C, Loeffler M, Steinke V, Rahner N, Holinski-Feder E, Dietmaier W, Schackert HK, Goergens H, von Knebel DM, Goecke TO, et al. Risks of less common cancers in proven mutation carriers with lynch syndrome. J Clin Oncol. 2012;30(35):4409–15.
Leoz ML, Sanchez A, Carballal S, Ruano L, Ocana T, Pellise M, Castells A, Balaguer F, Moreira L. Hereditary gastric and pancreatic cancer predisposition syndromes. Gastroenterol Hepatol. 2016;39(7):481–93.
Heald B, Mokhtary S, Nielsen SM, Rojahn S, Yang S, Michalski ST, Esplin ED. Unexpected actionable genetic variants revealed by multigene panel testing of patients with uterine cancer. Gynecol Oncol. 2022;166(2):344–50.
Liu TF, Y.; Feng, R; Zhou, L.; Gu, Y.; Dong, D.;Yi, H.; Yang, X.; Wang, C.: Wide morphological spectrums of renal neoplasms with TSC/mTOR, NF2, or monoallelic MUTYH germline mutation. Hum Pathol Rep 2023, 31: 96.
Hernandez-Martinez JM, Rosell R, Arrieta O. Somatic and germline ATM variants in non-small-cell lung cancer: therapeutic implications. Crit Rev Oncol Hematol. 2023;188:104058.
Maffuz-Aziz AL-A, S.; Espejo-Fonsecac, A.; Rodriguez-Cuevasa, S.: Clinical and pathological features of breast cancer in a population of Mexico. Cirugía y Cirujanos 2017, May.
Masciari S, Dillon DA, Rath M, Robson M, Weitzel JN, Balmana J, Gruber SB, Ford JM, Euhus D, Lebensohn A, et al. Breast cancer phenotype in women with TP53 germline mutations: a Li-Fraumeni syndrome consortium effort. Breast Cancer Res Treat. 2012;133(3):1125–30.
Schwartz CJ, Khorsandi N, Blanco A, Mukhtar RA, Chen YY, Krings G. Clinicopathologic and genetic analysis of invasive breast carcinomas in women with germline CHEK2 variants. Breast Cancer Res Treat. 2024;204(1):171–9.
Chen H, Wu J, Zhang Z, Tang Y, Li X, Liu S, Cao S, Li X. Association between BRCA status and triple-negative breast cancer: a meta-analysis. Front Pharmacol. 2018;9:909.
Rainville I, Hatcher S, Rosenthal E, Larson K, Bernhisel R, Meek S, Gorringe H, Mundt E, Manley S. High risk of breast cancer in women with biallelic pathogenic variants in CHEK2. Breast Cancer Res Treat. 2020;180(2):503–9.
Hinic S, Cybulski C, Van der Post RS, Vos JR, Schuurs-Hoeijmakers J, Brugnoletti F, Koene S, Vreede L, van Zelst-Stams WAG, Kets CM, et al. The heterogeneous cancer phenotype of individuals with biallelic germline pathogenic variants in CHEK2. Genet Med. 2024;26(5):101101.
Adaniel C, Salinas F, Donaire JM, Bravo ME, Peralta O, Paredes H, Aliaga N, Sola A, Neira P, Behnke C, et al. Non-BRCA1/2 variants detected in a high-risk chilean cohort with a history of breast and/or ovarian cancer. J Glob Oncol. 2019;5:1–14.
Fernandez Madrigal L, Rodriguez Garces MY, Jimenez Ruiz FJ. Impact of non-BRCA genes in the indication of risk-reducing surgery in hereditary breast and ovarian cancer syndrome (HBOC). Curr Probl Cancer. 2023;47(6):101008.
Prevalence of pathogenic variants in non-BRCA genes and their impact on clinical practice in Argentina. https://doiorg.publicaciones.saludcastillayleon.es/10.1200/JCO.2023.41.16_suppl.e22534
Catana A, Apostu AP, Antemie RG. Multi gene panel testing for hereditary breast cancer - is it ready to be used? Med Pharm Rep. 2019;92(3):220–5.
Weitzel JN, Neuhausen SL, Adamson A, Tao S, Ricker C, Maoz A, Rosenblatt M, Nehoray B, Sand S, Steele L, et al. Pathogenic and likely pathogenic variants in PALB2, CHEK2, and other known breast cancer susceptibility genes among 1054 BRCA-negative Hispanics with breast cancer. Cancer. 2019;125(16):2829–36.
Chen B, Zhang G, Li X, Ren C, Wang Y, Li K, Mok H, Cao L, Wen L, Jia M, et al. Comparison of BRCA versus non-BRCA germline mutations and associated somatic mutation profiles in patients with unselected breast cancer. Aging (Albany NY). 2020;12(4):3140–55.
Dutil J, Teer JK, Golubeva V, Yoder S, Tong WL, Arroyo N, Karam R, Echenique M, Matta JL, Monteiro AN. Germline variants in cancer genes in high-risk non-BRCA patients from Puerto Rico. Sci Rep. 2019;9(1):17769.
Guindalini RSC, Viana DV, Kitajima J, Rocha VM, Lopez RVM, Zheng Y, Freitas E, Monteiro FPM, Valim A, Schlesinger D, et al. Detection of germline variants in Brazilian breast cancer patients using multigene panel testing. Sci Rep. 2022;12(1):4190.
Tan QT, Alcantara VS, Sultana R, Loh KW, Go AL, Wong FY. Pregnancy-associated breast cancer: a multicenter study comparing clinicopathological factors, diagnosis and treatment outcomes with non-pregnant patients. Breast Cancer Res Treat. 2023;198(1):53–66.
Jernstrom H, Lerman C, Ghadirian P, Lynch HT, Weber B, Garber J, Daly M, Olopade OI, Foulkes WD, Warner E, et al. Pregnancy and risk of early breast cancer in carriers of BRCA1 and BRCA2. Lancet. 1999;354(9193):1846–50.
Cullinane CA, Lubinski J, Neuhausen SL, Ghadirian P, Lynch HT, Isaacs C, Weber B, Moller P, Offit K, Kim-Sing C, et al. Effect of pregnancy as a risk factor for breast cancer in BRCA1/BRCA2 mutation carriers. Int J Cancer. 2005;117(6):988–91.
Acknowledgements
Acknowledgments: The authors want to thank all the patients and medical staff who participated in this study and the Oncology Department that gave us the resources to carry out this work. The title of the paper, “Los olvidados” (the forgotten ones), is based on a 1950 Luis Buñuel Mexican movie (The young and the damned) considered a world memory. As in the picture, where children are ignored by society, non-BRCA genes should not be overlooked by the medical society.
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This research received no external funding. This project was carried out with resources from the Oncology Service of the “Dr. José Eleuterio González" University Hospital.
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DA: patient recruitment, genetic counseling, data analysis, clinical interpretation, and manuscript writing. MLGR: data analysis, molecular interpretation of data, writing, review, and manuscript editing. CEMG: database curation and statistical analysis. FAN: database curation and statistical analysis. CMVG: patient recruitment and funding acquisition. OVG: project administration, funding acquisition, and resources management. DCPI: data analysis, molecular interpretation of data, writing, review, and manuscript editing. CHBF: patient recruitment, genetic counseling, data analysis, clinical interpretation, writing, review, and manuscript editing.
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The study was conducted according to the guidelines of the Declaration of Helsinki and approved by the Institutional Review Board of the Hospital Universitario” Dr. José Eleuterio González” from the Universidad Autónoma de Nuevo León (protocol code ON18- 00015).
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All patients voluntarily consented to participate in this study by signing an informed consent, approved by the ethics committee of our institution.
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Additional file 1
: Multi-gene panels analyzed.
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Aguilar, D., Garza-Rodríguez, M.L., Muñiz-Garza, C.E. et al. Los olvidados: Non-BRCA variants associated with Hereditary breast cancer in Mexican population. Breast Cancer Res 27, 7 (2025). https://doiorg.publicaciones.saludcastillayleon.es/10.1186/s13058-024-01957-9
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DOI: https://doiorg.publicaciones.saludcastillayleon.es/10.1186/s13058-024-01957-9