From: Hypoxia-mediated repression of pyruvate carboxylase drives immunosuppression
Reagent or resource | Source | Identifier |
---|---|---|
Antibodies | ||
anti-CD8 antibody for IHC | Cell Signaling | Cat#98941 |
anti-CD4 antibody for IHC | Cell Signaling | Cat#25229 |
anti-PC antibody for western blot | Millipore-Sigma | Cat#HPA043922 |
anti-beta tubulin antibody for western blot | Developmental Studies Hybridoma Bank | Cat#E7 |
anti-LDH-A antibody for western blot | Cell Signaling | Cat#2012 |
anti-MCT-1 antibody for western blot | Abcam | Cat#ab93048 |
anti-HIF1a antibody for western blot | Cell Signaling | Cat#14179 |
anti-phospho-PDH antibody for western blot | Cell Signaling | Cat#31866 |
anti-AKT antibody for western blot | Cell Signaling | Cat#9272 |
anti-phospho-AKT antibody for western blot | Cell Signaling | Cat#4060 |
anti-CD45 antibody for flow cytometry | BD | Cat#564279 |
viability stain for flow cytometry | Invitrogen | Cat#L34961 |
anti-CD44 antibody for flow cytometry | BD | Cat#741227 |
anti-CD11c antibody for flow cytometry | BD | Cat#564986 |
anti-CD4 antibody for flow cytometry | BD | Cat#741913 |
anti-F4/80 antibody for flow cytometry | BioLegend | Cat#123124 |
anti-Ly6G antibody for flow cytometry | BioLegend | Cat#127633 |
anti-TIM3 antibody for flow cytometry | BD | Cat#747618 |
anti-IA/IE antibody for flow cytometry | BioLegend | Cat#107661 |
anti-CD19 antibody for flow cytometry | BioLegend | Cat#115531 |
anti-NK1.1 antibody for flow cytometry | BioLegend | Cat#108727 |
anti-CD11b antibody for flow cytometry | eBioscience | Cat#46-0112-82 |
anti-CD8a antibody for flow cytometry | BioLegend | Cat#100758 |
anti-CD69 antibody for flow cytometry | BioLegend | Cat#104510 |
anti-CD103 antibody for flow cytometry | BioLegend | Cat#121426 |
anti-CD3 antibody for flow cytometry | BioLegend | Cat#100216 |
anti-PD-1 antibody for flow cytometry | BioLegend | Cat#135224 |
anti-Ly6C antibody for flow cytometry | BioLegend | Cat#128055 |
anti-FOXP3 antibody for flow cytometry | eBioscience | Cat#17-5773-80A |
Chemicals, Peptides, and Recombinant Proteins | ||
AZD3965 | MedKoo Biosciences | Cat#1448671-31-5 |
FX-11 | MedChemExpress | Cat#HY16214 |
Syrosingopine | Sigma-Aldrich | Cat#SML-1908 |
Mir05 | Oroboros | Cat#60101-01 |
Critical Commercial Assays | ||
CellTiter-Glo | Promega | Cat#G7570 |
Lactate-Glo | Promega | Cat#J5021 |
Mouse tumor dissociation kit | Miltenyi Biotec | cat#130–096-730 |
EZNA HP Total RNA kit | Omega Bio-Tek | Cat#R6812 |
Verso cDNA Synthesis Kit | Thermo Scientific | Cat##AB-1453/B |
Maxima SYBR Green/ROX qPCR Mastermix | Thermo Scientific | Cat#K0222 |
Clariom S Assay HT, mouse | Affymetrix | Cat#902972 |
Experimental Models: Cell Lines | ||
MWnt | Hursting lab | NA |
E0771 | Wendt lab | NA |
4T1 | Wendt lab | NA |
D2.A1 | Wendt lab | NA |
MDA-MB-231 | ATCC | CRM-HTB-26 |
Experimental Models: Organisms/Strains | ||
Mouse: C57BL6/J: wildtype | Jackson labs | Strain id: 000664 |
Mouse: BALB/c:Â wildtype | Charles River | Strain id:Â 028 |
Mouse: NSG: NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ | University of North Carolina at Chapel Hill Animal Models Core | NSG |
Oligonucleotides | ||
See Table S1 for oligonucleotide primer sequences | Â | Â |
Recombinant DNA | ||
pLV PC over expression | This manuscript | NA |
pLV empty vector | This manuscript | NA |
pLKO.1 scram shRNA | Dharmacon | RHS6848 |
psi-LVRU6H scram shRNA | Genecopoeia | CSHCTR001 |
pLKO.1 shPC25 shRNA | Dharmacon | RMM3981-201836951 |
pLKO.1 shPC28 shRNA | Dharmacon | RMM3981-201846492 |
psi-LVRU6H shPC-B shRNA | Genecopoeia | MSH074157 |
psi-LVRU6H shPC-C shRNA | Genecopoeia | MSH074157 |
SMARTvector inducible shPC shRNA | Dharmacon | V3SM11253-234391411 |
PC promotor luciferase reporter | This manuscript | NA |
Software and Algorithms | ||
FlowJo | FlowJo | FlowJo V10.8.1 |
ImageJ | FIJI | FIJI V2.13.1 |
Graphpad Prism | Graphpad Software Inc | Graphpad Prism V9.5.1 |
KMPlotter | Győrffy et al.[33] | NA |
GSEA | Subramanian et al., Liberzon et al., and Reimand et al.[30,31,32] | V4.3.2 |
CIBERSORTX | Newman et al.[28] | NA |