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Table 1 Top ten downregulated and upregulated DEGs of tissue comparisons

From: Unraveling malignant phenotype of peritumoral tissue: transcriptomic insights into early-stage breast cancer

PT vs. TT

PT vs. NT

TT vs. NT

Gene

FC

p-value

Gene

FC

p-value

Gene

FC

p-value

Downregulated genes

CST1

-11.64

0.0037

CNN1

-8.99

0.015

KRT14

-32.4

0.016

CST4

-7.23

0.028

VIT

-8.38

9.87E-05

LYVE1

-19.61

1.03E-05

PGR

-4.95

0.042

LEP

-7.18

0.0184

VIT

-19.19

3.00E-07

SPP1

-4.94

0.0112

NTRK2

-7.04

0.013

CRYAB

-19.07

9.56E-09

MMP13

-4.73

0.013

PTN

-6.83

0.0156

SFRP1

-16.84

8.65E-06

GJB2

-3.93

0.016

FXYD1

-6.64

1.13E-05

NTRK2

-15.68

0.0007

COL11A1

-3.39

0.0223

SAA1

-6.42

0.0304

LEP

-14.69

0.0001

CLDN7

-3.17

0.0238

SAA2

-6.21

0.0376

MME

-14.54

4.34E-09

HIST1H2BD

-3.16

0.0137

FIGF

-5.51

5.89E-05

RBP4

-14.11

0.0001

S100A14

-3.03

0.0464

KLK5

-5.48

0.0097

PIK3C2G

-13.98

0.0283

Upregulated genes

LYVE

9.22

0.0018

POSTN

14.62

0.0287

POSTN

26.53

0.0006

FOSB

8.24

0.0107

FN1

10.11

0.0038

MMP13

25.77

1.15E-05

ADH1B

6.82

0.0001

CTHRC1

8.74

0.0021

ANKRD30B

20.04

0.0003

ABCB5

6.53

0.0199

COL1A1

8.69

0.0017

SPP1

12.72

0.0005

MME

5.16

5.58E-05

ANKRD30B

7.89

0.0067

HIST1H2BM

12.21

0.0119

CHRDL1

5.01

0.0007

PRLR

6.04

0.0045

GJB2

11.42

9.18E-05

FHL5

4.97

0.0119

COL5A1

6.02

0.0154

FN1

9.48

3.84E-05

SRPX

4.94

0.0004

TOP2A

5.64

0.0007

TSPAN1

9.44

0.0044

ACKR1

4.9

0.0292

SERPINE1

5.55

0.0039

TRPS1

8.37

0.0007

ANK2

4.64

0.0063

MMP13

5.45

0.0106

CST1

8.1

0.0028

  1. TT: Tumoral Tissue, PT: Peritumoral Tissue, NT: Non-tumoral Tissue, and FC: Fold change